BtaALTD0015001-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000000507 | NR4A1
Description
Bos taurus nuclear receptor subfamily 4, group A, member 1 (NR4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075911]
Coordinates
chr5:27992103-27992863:-
Coord C1 exon
chr5:27992763-27992863
Coord A exon
NA
Coord C2 exon
chr5:27992103-27992209
Length
0 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GGTCACGTCTCTTCCCGCAGGGC
3' ss Score
9.78
Exon sequences
Seq C1 exon
CTGGGCCATCAACTTGGGCGGACCGGGGCGGGGAGAGGAGTTACTGTAAGTGGATGAGGCAGGTGTTCCTGGTCAGCCGGAGGTCTGGATGCAGGAAGCAC
Seq A exon
NA
Seq C2 exon
GGCTCCTCAAGGCCACCAGGAAGAGGCCCCGACCAGCCCTGGGAGTCTCCCTTGGTGCAGCTGTCCAGGACCTCTGAGAATCAAAGCAGGTCGTGTGGAGGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000507-1-1,2-1,3-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAACTTGGGCGGACC
R:
AGCTTCCTCCACACGACCTG
Band lengths:
202-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development