BtaALTD0015016-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34340208-34341600:-
Coord C1 exon
chr26:34341289-34341600
Coord A exon
NA
Coord C2 exon
chr26:34340208-34340339
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGC
5' ss Score
4.72
3' ss Seq
GCCTCCCTCGTTCCCCCAAGGTC
3' ss Score
8.69
Exon sequences
Seq C1 exon
TTCCGGTACAAAGAGGCCTTCCTACGGGACCGGGGCCTGCAGATAGGGTACCGCAGCATCAACGACGACCCGAGGACGAAGCATTTCCTCAGCGTCGGCAGACTCCAGAGTGACAACGAGTACAAGAAGGACTTCGCCAAGAGTCGGTCCCAGTTCCACAGCCGCCCAGACCAGCCCGGCTTCCTCCAGGCCAAGAGGAGCCAGCAGCTGGCCAGCGACGTGCACTACAGGCAGCCCCTGCCCCAGCCCACCTGCGACCCGGAGCAGCTGGGCCTGAAACACGCGCAGAAGGCCCACCGGCTGCAGAGCGAT
Seq A exon
NA
Seq C2 exon
GTCAAGTACAAATCAGACTTGAACCTGACCAGAGGTATTGGCTGGACACCTCCTGGCTCCTACAAAGTGGAAATGGCTCGGCGGGCTGCAGAATTGGCCAACGCGAGGGGCCTGGGTCTCCAAGGGGCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-48-48,49-48-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=0.386
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=21.2),PF0088013=Nebulin=PU(53.6=14.4)
A:
NA
C2:
PF0088013=Nebulin=PD(39.3=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGTGCACTACAGGCAG
R:
TGTCCAGCCAATACCTCTGGT
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development