BtaALTD0015069-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105679259-105680002:+
Coord C1 exon
chr11:105679259-105679348
Coord A exon
NA
Coord C2 exon
chr11:105679882-105680002
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
ACGTCCTGCCCTCCAGGTAGTGA
3' ss Score
1.04
Exon sequences
Seq C1 exon
CGTTCGCCGAGCGGCGCGAGCGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCCATGAAAGCCGACACCTCTCACGACTCCCGAGACA
Seq A exon
NA
Seq C2 exon
TGACCTGCAGAGCTCCCATTGCACCCTGGGCGAGGCTTTCGAGGACCTGGACTGGGAGACTGAGAAGGGCCTGGAGGCTGTAGCCTGTGACACTGAGGGCTTCGTGCCACCCAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247-14-11,15-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142521=DUF4347=PU(1.4=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAAAGCCGACACCTCTC
R:
CTCAGTCTCCCAGTCCAGGTC
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development