BtaALTD0015111-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000003183 | NTN4
Description
Bos taurus netrin 4 (NTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001102203]
Coordinates
chr5:60381775-60390342:-
Coord C1 exon
chr5:60390230-60390342
Coord A exon
chr5:60390218-60390229
Coord C2 exon
chr5:60381775-60381843
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAA
5' ss Score
5.96
3' ss Seq
TGTTCATTTACTTTCTTTAGGTA
3' ss Score
9.67
Exon sequences
Seq C1 exon
CACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCATTCCATGCACAATAAGAGTGAGCCAACCTGGGATTGGAAGGATGAGCAAGGATTTTCTGCACTTCGACATTCAG
Seq A exon
GTGGGACAAGAG
Seq C2 exon
GTAAATGTGAATGTAAGGAACAGGTGTTAGGAAACTCCAAGGCATTCTGTGGAATGAAATACTCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003183-9-10,10-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175916=NTR=PU(9.3=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAACCTGGGATTGGAAG
R:
TCCACAGAATGCCTTGGAGTT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development