BtaALTD0015907-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000017832 | PDK3
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 3 (PDK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101934]
Coordinates
chrX:125848355-125855668:-
Coord C1 exon
chrX:125855537-125855668
Coord A exon
NA
Coord C2 exon
chrX:125848355-125849057
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAAA
5' ss Score
0.62
3' ss Seq
CCCCATTATTTTCTTTGTAGGGA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GCCCTTTCAAGTGAATCATTTGAGAGACTTCCGGTTTTTAACAAGTCCGCATGGCGCCATTACAAGAGCACAGCTGAAGCTGACGATTGGAGCAATCCCAGCAGTGAGCCCAGGGACGCTTCCAAATACAAG
Seq A exon
NA
Seq C2 exon
GGACAAGATGAAGACTAACAGAACTTTGTAAAGAACTGAATGCTTCAGTCCTCTCCGTGAAGAAAAGATGGCCTTCTGCAAGTCACCCAGAAAGAGCTCCTTTCCTCCACCAACTCTGAATGTGGCGCTATAGATAATCCAGTGCTTGAATGTGTATTTTTCTCCATATAAGCTGGACCTTTTCCACAGAAGTTTCCTGTAGCTACTTCATATCTTCCACTAAAGCAGTAACTTGAGTCATTTTTCATAGTACATTGCTGTGGTTTGGTTGGCGCCTGTCGTAAGGGGACACAGAGCCTTATTAGTGCCCGTGCCCTCATACCTCCGTCTTCTTTATCATAGACTATCTACAGTCTCCCCAGATGTCTTGCCTCCCTCCCCATTCCAGATACAGCCGATCTCTACTGCTGCTCTTTGTGACCAAATACCATGTTTGTCCCAAACCACCAACTGTGGCCTTGGGGAGTCTGGAATTTGAAGACATCAGATGAGCACGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017832-14-12,15-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=PD(0.8=2.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGAGCAATCCCAGCAGTG
R:
TTCACGGAGAGGACTGAAGCA
Band lengths:
108-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development