BtaALTD0016088-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000014127 | PGHS-2
Description
Bos taurus prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) (PTGS2), mRNA. [Source:RefSeq mRNA;Acc:NM_174445]
Coordinates
chr16:69270067-69271338:-
Coord C1 exon
chr16:69271238-69271338
Coord A exon
chr16:69271008-69271237
Coord C2 exon
chr16:69270067-69270183
Length
230 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGTC
5' ss Score
-1.28
3' ss Seq
TGTCTGTACTGTTTTTGTAGCAA
3' ss Score
7.07
Exon sequences
Seq C1 exon
CCGCGCACCTCCACGCCTCCGCCGGCCCCGCGCCCCGCCCGCAGCCGAGATGCTCGCCCGGGCCCTGCTGCTCTGCGCTGCCGTGGCGCTCAGCGGTGCAG
Seq A exon
GTGAGTGAGTTCCTGGCGCCTGTGCCCGGGATTCCGCGGCTCCGTCCACCCGGGCTGAGTTTCTGCTCAGACTTCTCCCGGGAACTCCAGGTGTTATAAATACTCCCAGAATTCAGAGGCCGAGTCCGGACGGATAGCCCCGCTTTGCCCTCAGCTCTGATCTTCATGGGCCAGTTATTGCACCCATCTTTTCTCATCTGCTAAATAGGAACGGGGATACTAATTTGCAG
Seq C2 exon
CAAATCCTTGCTGTTCCCATCCATGCCAGAATCGAGGTGTATGTATGAGTGTAGGATTTGACCAGTATAAATGTGACTGTACCCGAACAGGATTCTACGGTGAAAACTGTACCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014127-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development