BtaALTD0017328-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39874357-39875674:+
Coord C1 exon
chr16:39874357-39874443
Coord A exon
NA
Coord C2 exon
chr16:39875549-39875674
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TTGTTTTTTTTAATGTTTAGGAA
3' ss Score
9.47
Exon sequences
Seq C1 exon
AAGTTCCACCAGCACAACCAAAACCTGGGGTTGCAGCTCCCCCAGAAGTAGCACCTGCTCCCAAATCATGGGCCAGTAACAAGCAAG
Seq A exon
NA
Seq C2 exon
GAATCCAGGTGAATAGTCATTTTCAACAAGAATTTCCCAGCCTACAGGCAGCTGGGGATCAGGAAAAAAAAGAAAAAGAAGCAAATGATGACAACTATGGACCTGGACCCAGTTTACGCCCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821-6-6,7-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(22.6=100)
A:
NA
C2:
PF070016=BAT2_N=PD(19.5=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTGCTCCCAAATCATGG
R:
TTTTTCCTGATCCCCAGCTGC
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development