BtaALTD0017348-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000034665 | PRSS55
Description
protease, serine, 55 [Source:HGNC Symbol;Acc:HGNC:30824]
Coordinates
chr8:8587571-8589861:-
Coord C1 exon
chr8:8589787-8589861
Coord A exon
chr8:8589669-8589786
Coord C2 exon
chr8:8587571-8587821
Length
118 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
TGGTTCTCCACCTCCACCAGGCC
3' ss Score
6.36
Exon sequences
Seq C1 exon
AATGTGGTGAAAGACCCATGTTTGCAAGAGGAGCTCAGTATTCCAGAATCACAGGAGGGATAGAGGCTGGGGTGG
Seq A exon
GTGAGTTTCCATGGCAGGTGAGTATTCAGGCAAGAAATGAACATTTCTGTGGTGGCGCCATCCTCAACGAGTGGTGGATTATCACGGCGGCTCACTGCTTTTACCCTGAGCAGTTACC
Seq C2 exon
GCCCACAGATCTGAGAGTCGTGCTGGGAACCAATAGCCTAACCAGCCCATCCCTGGAGATAAAGGGAGTCACAACCATCATTCGTCACAAGGACTTTCAAAGAGTCAGCATGGACAATGACATCGCTCTGCTGATGCTGGACAATCCCATCACGTTCAACGAGCTCAAAGAACCCATCTGCCTGCCCATGCAGCCCGGCCTCTCCCAGTGGCACAAATGCTGGGTGGCAGGATGGGGGCAGGTCAAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034665-1-1,2-1,3-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=73.8)
A:
NA
C2:
PF0008921=Trypsin=FE(36.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGTTTGCAAGAGGAGCT
R:
GCAGGCAGATGGGTTCTTTGA
Band lengths:
246-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development