BtaALTD0017898-2/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97673977-97687337:+
Coord C1 exon
chr11:97673977-97674077
Coord A exon
chr11:97674078-97674112
Coord C2 exon
chr11:97687259-97687337
Length
35 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TTACCCCCCTGCTTTTTCAGAGG
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGCTCGGCCCGGCTCCAGCCTCCGAGCGAAGTCGCCGCTGCCGCCTGGGCCGTTCCCAGGGCCATGAGGAGGCGGCGGCAGCCGCTGCGGCCCGCGTCAAG
Seq A exon
GTGACCGGCCAGGACTGCGGCGGCGAGAGCGGGCG
Seq C2 exon
AGGCTCCTGTTTGGAAAGAGACCTGCTGGGACGGTTTATCCTGTTGGCCTGGGATTATGAAGCCCAACACGTGTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-0-0,1-0,2-0,3-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCAGGGCCATGAGGAG
R:
GGAACACGTGTTGGGCTTCAT
Band lengths:
126-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development