BtaALTD0018277-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17016120-17017650:-
Coord C1 exon
chr7:17017435-17017650
Coord A exon
chr7:17017337-17017434
Coord C2 exon
chr7:17016120-17016223
Length
98 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CCCTCCACCCCGCTCCCCAGCGC
3' ss Score
6.81
Exon sequences
Seq C1 exon
GAGCTCTTCTCGCGCCTGCGGCCCTTCGAGTGCCTGGGCTCCGTGTGGTCGCAGCGAGACCGGCCGGGGGCCACAAGCATCGCCCCCACTGTGCGCGCCACCGTGACCCAGTTCAACACAGTGACCGGCTGCGTGCTGGGCTCAGTGCTCGGGGAACCGGGCCTGGCCGCCCCGCAGAGGGCGCAGCGGCTGGAGAAGTGGATCCGCATAGCTCAG
Seq A exon
GTGCATCTCTGGCGGGAGCGTGGGGGCAGGGCATGCGCGGGGCCTAGGCTCAGTGAGAGAGGCTGGGGGCGGGCGGAAGGCCAAGGACGGGTCTCTGG
Seq C2 exon
CGCTGCCGGGAACTGCGGAACTTCTCCTCCCTGCGTGCCATCCTGTCCGCCCTGCAGTCTAACCCCATCTACAGGCTGAAGCGCAGCTGGGGCGCCGTGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198-8-8,9-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(33.5=100)
A:
NA
C2:
PF0061714=RasGEF=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCAACACAGTGACCGG
R:
AGATGGGGTTAGACTGCAGGG
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development