BtaALTD0019059-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000040521 | SAMD14
Description
Bos taurus sterile alpha motif domain containing 14 (SAMD14), mRNA. [Source:RefSeq mRNA;Acc:NM_001105018]
Coordinates
chr19:37171018-37171877:+
Coord C1 exon
chr19:37171018-37171179
Coord A exon
chr19:37171180-37171184
Coord C2 exon
chr19:37171589-37171877
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
AGCAGCTGCCCCTCCTCCAGGGA
3' ss Score
5.77
Exon sequences
Seq C1 exon
ACCTGGACTTGGCAGTGCCAGAAACCGTCAGACTGGACAGCAGTTTACACAAGGCCCGGGCCCAACTACTGGCCAAGGGCCGGAGACACCGGCCCTCTCGCTCCAGGCTTCGGGACAGTGCCAGCTCTGCAGAGGATGGTGAAGGCTCCGATGGGCCTGGAG
Seq A exon
GCAAG
Seq C2 exon
GGAACCGACGGCTGCGGGAGCCCCCTGCACCGGCTGCGCTCGCCTCTGCACTCGGGCCCCGGGTCCCCAGCTGGGGGCTCCTTCTGCCTGGAGCCCCCGGGATTGCGGCGCAGCCTGGACGAGGACGAGCCGCCGCCCTCACCGCTCGCACGCTACCGGCCCCTGCACAACACCGCCTCGCACGAGGGTCTGGCCGCCGCCTCCGGCTCGCCGCCCCGCTCCGCTGCTTCGTCCGACAGCTCGCCCAGCTTCGTGCGCCGCCACCCTCGCGCCGAGCTGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040521-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGCAGAGGATGGTGAA
R:
CCCGAGTGCAGAGGCGAG
Band lengths:
96-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development