BtaALTD0020215-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108280613-108281499:+
Coord C1 exon
chr2:108280613-108280760
Coord A exon
chr2:108280761-108280831
Coord C2 exon
chr2:108281351-108281499
Length
71 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTGACCTCCACTCGCTCCAGGGG
3' ss Score
7.58
Exon sequences
Seq C1 exon
AACTGTCAATGGAACTGGGGGGCTCTGAGGCCACCCCTGATGATGACCCCCTGCTGCGGACTGGCTCGGTGTTTGGGGGGCTTGTCCGGGACGTGAAGCGCCGGTACCCGCACTACCCCAGCGACCTGCGGGACGCCCTGCACTCCCA
Seq A exon
GTGCGTGGCCGCCGTGCTTTTCATCTACTTCGCTGCCCTCAGCCCCGCCATCACCTTCGGGGGGCTGCTAG
Seq C2 exon
GGGAGAAGACGGAGGGGCTGATGGGTGTGTCTGAGCTGATCGTGTCCACGGCTGTGCTTGGCGTCCTCTTTTCTCTGCTGGGGGCCCAGCCGCTGCTCGTGGTCGGCTTCTCTGGGCCACTGCTCGTCTTCGAAGAAGCCTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975-16-16,17-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(28.5=77.0)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCCACCCCTGATGAT
R:
CACGATCAGCTCAGACACACC
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development