BtaALTD0021033-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000000703 | ST6GAL2
Description
Bos taurus ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 (ST6GAL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001008668]
Coordinates
chr11:45414046-45442602:+
Coord C1 exon
chr11:45414046-45414146
Coord A exon
NA
Coord C2 exon
chr11:45441696-45442602
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
GTGACACCCTCTGTTTTCAGGTC
3' ss Score
11.24
Exon sequences
Seq C1 exon
GCTCGCAGCCGGGGAGCGCCCACCTTGTACCGTTTGCGCCGCCGCCGCCAGGCAGTGGGGAGTGGTCGCGGAACTTCCCGAGGCCAGCTGCCGCCCGCTAG
Seq A exon
NA
Seq C2 exon
GTCCAGGTCGCCATCTCAGGACACAGGCGCTAACCCCGTGGACCTGCCATGAAACCGCACCTGAAGCAATGGAGACAAGGAATGCTCTGCGGGGTGTTTGCATGGGGGCTCTTCTTTGTGGTGATCTTCCTCTACTTCACCGACAGCAGCCCAGCCAAGCCTGCGCCCAGCTCCTTCTCCTTTCTGGAGACCCGGAGGCTGCTGCCCGCACAAGGGAGGCAGCGGGCCATTATGGGGGCCTCAGAGGGCCTGCCCGAGGGCGCGGACTTGCGGCGGGGGTCTCCCCGGGGACTCCCATCTGGCCCCCTGCGGACATGGGCCGGAGATGGCTTTGAACGTGAACAAGAGTTTCTTTCGGTCCAGACAGGGAGAACGTCCCTAAGCTCTTTTGCCCCGGAGGACTCCGCTCCGGGCACGTCGGGGCGCCTCTTCCCTGGGGACCCAGGCCCGGAGGGGGCTCGGCCGCCACGCGCAGCCCCCGGACGGCGGGCAAAGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000703-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.341
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(26.7=24.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGTCGCGGAACTTCC
R:
GGGCCAGATGGGAGTCCC
Band lengths:
347-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development