BtaALTD0021037-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007309 | ST6GALNAC5
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192804]
Coordinates
chr3:67889298-68071963:-
Coord C1 exon
chr3:68071733-68071963
Coord A exon
NA
Coord C2 exon
chr3:67889298-67889707
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
CCTTCTCCCTCTCCTTCCAGCCG
3' ss Score
12.35
Exon sequences
Seq C1 exon
CGCCATGGTCTGGCAGTGTGTTTAGCGCTCACCACCATGTGCACCAGCTTGTTGCTCGTGTACAGCAGCCTCGGAGGCCAGAAGGAGCGGCCCCCGCAGCAGCAGCAGCAGCAGCAGGCAGCGGCGACCCTCAGCTCTCGGCGGTCGGCAGAGAGCAGCCCCCCGCCGCGCCCGGAGACCCCCGCGGGACCGCGGCCACTGGACGGATACCTCGGCGTGGTGGACCACAAG
Seq A exon
NA
Seq C2 exon
CCGCTGAAAATGCACTGCAGGGACTGCGCCCTGGTGACGAGCTCCGGGCAGCTGCTGCGCAGCAGGCAAGGCGCCCAGATTGACCAGACTGAATGTGTCATTCGCATGAACGACGCCCCCACGCGTGGCTACGGGCGGGACGTGGGCAACCGCACCAGCCTGCGGGTCATCGCGCATTCCAGCATCCAGCGGATCCTCCGCAACCGCCATGACCTGCTCAACGTCAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGCCGCGACGGCAAGGGCCAGGTCTACAACAACCTGCAGCTGCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATCGCGCGCCACAAGATGCTGCAGTTCGACGAGCTCTTCAAGCGCGAGACCGGCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007309-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(17.1=62.3)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(48.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGAGGCCAGAAGGAG
R:
CTGCAGTGCATTTTCAGCGG
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development