BtaALTD0021039-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000044129 | ST6GALNAC6
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (ST6GALNAC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001001151]
Coordinates
chr11:98577315-98579068:-
Coord C1 exon
chr11:98579014-98579068
Coord A exon
chr11:98578883-98579013
Coord C2 exon
chr11:98577315-98577402
Length
131 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
ATCCTTTCTGTGGCTTGCAGGTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
ATGAGGAAACTGAGGCTCATAGAGGTCACATGGCTTGCCCGAGGCCCCTCAGCCA
Seq A exon
GTAAGTGGAGGAACCCGGATTTGCAGTTGAACCTGAGATGCTGTACTGACCATGGCCTTCTCAGAGCAGGACTGTGACGGGGGCTGACCAAGGGGACAGTGGTCCTGGCTGAGGGCACTGCTCAGGCAAAG
Seq C2 exon
GTGTGACCACACACCCCTACCTGGGCCACCTGCAGGACACTGGCCCCTGCCCCTCAGCAGACGCCGGAGAGAGATGAAGAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044129-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.722
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAACTGAGGCTCATAGAGG
R:
GTTGCTCTTCATCTCTCTCCGG
Band lengths:
138-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development