BtaALTD0021501-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37429641-37490265:-
Coord C1 exon
chr2:37490165-37490265
Coord A exon
chr2:37490129-37490164
Coord C2 exon
chr2:37429641-37429750
Length
36 bp
Sequences
Splice sites
5' ss Seq
CCGGCAGGT
5' ss Score
1.64
3' ss Seq
ACTGGTTTTTCTTTTTTCAGTTC
3' ss Score
10
Exon sequences
Seq C1 exon
CTTAGCAGTGGCTGCTGCAGGAGCAGCGGCCGCCTTGGGAGCCGGAGGAGAGGCAGCTGCGGAGCGCTGAGCTGGCCGCGCCCCGAGGCCCGGCCCTGGGG
Seq A exon
GTGGGTAACAGCGCCGAGGAGCTGGAAACTTTCCCG
Seq C2 exon
TTCTCGTTCCATCTTGCTGTAGTCGCCTGATCCAGAGGAACGTTCGGGGTTTCCCCCGAGTGAGACAGCTGCTCTCTGTTGCCAGCAAGTGGAGTCTGGGGTGAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-0-2,1-2,2-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCTGCTGCAGGAG
R:
CAGGCGACTACAGCAAGATGG
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development