BtaALTD0021569-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99307764-99308890:+
Coord C1 exon
chr11:99307764-99307830
Coord A exon
chr11:99307831-99307838
Coord C2 exon
chr11:99308727-99308890
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ACCCTGCCTGTCTCTCCCAGAGC
3' ss Score
10.37
Exon sequences
Seq C1 exon
GGCATGAATGAGATCGTGGGGCCCCTCTACTACACCTTTGCCACCGACCCCAACAGCGAGTGGAGAG
Seq A exon
GTAAACAG
Seq C2 exon
AGCATGCTGAGGCAGATACCTTTTTCTGCTTCACCAACCTCATGGCTGAGATCCGGGACAACTTCATCAAGAGCCTTGATGACTCCCAGTGTGGCATCACCTACAAGATGGAAAAGGTGTACTCCACCCTGAAGGATAAGGACATGGAACTCTACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480-14-15,15-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(28.8=67.1)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCCCTCTACTACACCTTT
R:
CCATGAGGTTGGTGAAGCAGA
Band lengths:
94-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development