BtaALTD0022199-2/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000013889 | TMEM141
Description
Bos taurus transmembrane protein 141 (TMEM141), mRNA. [Source:RefSeq mRNA;Acc:NM_001034462]
Coordinates
chr11:106375876-106376205:-
Coord C1 exon
chr11:106376138-106376205
Coord A exon
chr11:106376122-106376137
Coord C2 exon
chr11:106375876-106375983
Length
16 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
3' ss Seq
CCCTGCCCCCTGCTCCCCAGTCG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GCACCGGTGCAACCTTCGGCCTGCAGATGCTGGTTCAAAGGAAGCTTCCATACCCCTTTCAGTGGAAG
Seq A exon
GTGCTGCTGGCTGTGG
Seq C2 exon
TCGCAGGCTCAGTGGCCAGCTACTGGGTGACCCGAGTGGAGTCGCAGAAATGCAGCAACCTCTGGCTCTTCCTGGAGACAGGGCAGCTCCCCAAAGACATGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013889-4-5,5-5,6-5,7-5-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.2=100),PF140121=DUF4229=FE(63.6=100)
A:
NA
C2:
PF151101=TMEM141=PD(29.2=75.7),PF140121=DUF4229=PD(27.3=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCATACCCCTTTCAGTGG
R:
TGTCTCCAGGAAGAGCCAGAG
Band lengths:
105-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development