BtaALTD0022681-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010497 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr11:106305880-106311476:-
Coord C1 exon
chr11:106311376-106311476
Coord A exon
chr11:106311182-106311375
Coord C2 exon
chr11:106305880-106306095
Length
194 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGC
5' ss Score
5.95
3' ss Seq
TGCGCTGTGCTCTCCCTTAGGGC
3' ss Score
11.36
Exon sequences
Seq C1 exon
TGGTAGGCCCCCACAGCAGTCCGTCAGGCGGGCTAGGGGGCGGGTCGGCGGCACCCGCAGCGGCTGGCTGGCAGGCAGTTCCGGGCGCGAGGCGACCGTTG
Seq A exon
GTGAGTCCTGACGTCGGGGTCGGGGTCGCGGTGGGGTCGGGGGTCGGGGGTCGGGGTCTAGGGGCGGGGACGCGGGGTGGCGGGGCGCGCGGACCCGGGAGGCTCGGCGGGAGGCGCGGACGCCGCGGCGCGCGCGCCTGAGGGGATTTCTCGGGGCCGGAAACTGAAAGTCGGAGCGGGCCCCACTCAGGAAG
Seq C2 exon
GGCGTGGGCTTGGTGGGCTGCGGCGCTCATGGCTGCAGCCAGCGTGACCCCTCCCGGCTCCCTGGACCTACTGCAGCCCGGCTTCTCCAAGACTCTCCTGGGGACCAAGCTAGAGGACAAGTACCTGTGCTCGGCCTGCAAGAACGTGCTGCGCAGACCCTTCCAGGCTCAGTGTGGCCATCGCTACTGCTCCTTCTGCCTGAGCAGCATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010497-3-1,4-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=40.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCCCCCACAGCAGTC
R:
CACGTTCTTGCAGGCCGAG
Band lengths:
246-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development