BtaALTD0023805-1/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35428280-35519324:+
Coord C1 exon
chr3:35428280-35428380
Coord A exon
NA
Coord C2 exon
chr3:35519208-35519324
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
AGCTATTTCCCATTCCTCAGTTT
3' ss Score
5.33
Exon sequences
Seq C1 exon
AGACCCTCCGCGATGGAGTCATGCTCTGCCAGCTGCTCAACAACCTCCGGGCGCACTCCATCAACCTGAAGGAGATCAACCTGAGGCCGCAGATGTCCCAG
Seq A exon
NA
Seq C2 exon
TTTCTCTGTTTGAAGAACATAAGGACATTCCTCACGGCCTGTTGTGAGACGTTTGGAATGAGAAAGAGTGAACTGTTCGAGGCATTTGACCTGTTTGATGTCCGTGACTTCGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-0-0,1-0,2-0,3-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(39.5=87.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGTCATGCTCTGCCAG
R:
AGGTCAAATGCCTCGAACAGT
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development