BtaALTD0024571-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012615 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr2:52399450-52406207:+
Coord C1 exon
chr2:52399450-52399630
Coord A exon
NA
Coord C2 exon
chr2:52405630-52406207
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AATCTTGTTCTCTCTCCCAGGAA
3' ss Score
10.43
Exon sequences
Seq C1 exon
GGAGAATTGCTTGATGGAGCACAAGACTACATGTCAGGCCTAGATGACATGACAGACTCCGACTCCTGTCTGTCTCGAAAGAAGATCAAGAAGACAGAGAGTGGCATGTATGCATGTGATTTGTGTGACAAGACATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAG
Seq A exon
NA
Seq C2 exon
GAAAAAGACCACATCAGTGTCAGATTTGTAAGAAAGCGTTTAAACACAAGCACCACCTTATCGAGCACTCGAGGCTTCACTCAGGCGAGAAGCCCTATCAGTGTGATAAATGTGGCAAGCGCTTCTCACACTCGGGCTCCTACTCGCAGCACATGAATCACAGGTATTCCTACTGCAAGCGGGAGGCGGAGGAGCGGGAAGCGGCGGAGCGCGAGGCGCGCGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGGGCTTACTTGCAGAGCATCACTCCTCAGGGGTACTCTGACTCGGAGGAGCGGGAGAGTATGCCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAAGGCGAGGATGGTTATGGCAAGCTGGGGAGACAGGATGGCGATGAGGAGTTCGAGGAGGAAGAGGAAGAAAGTGAAAATAAAAGTATGGATACGGATCCCGAAACGATACGAGATGAAGAGGAGACTGGAGATCACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012615-15-12,16-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.766
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.8),PF134651=zf-H2C2_2=WD(100=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCCCTTCTGCGACATA
R:
CCGAGTCAGAGTACCCCTGAG
Band lengths:
342-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development