BtaALTD0024574-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010208 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr11:99264552-99268158:-
Coord C1 exon
chr11:99267991-99268158
Coord A exon
chr11:99267985-99267990
Coord C2 exon
chr11:99264552-99264767
Length
6 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TGTCTCCTGGCCTCACCCAGGTC
3' ss Score
7.54
Exon sequences
Seq C1 exon
CTGGTCATCACGGCCCTCAAGTGCCACAAGTATGACAAGAACATCCAGGTGACCGGCAGCGCCGCCCTTTTCTACCTGACCAATTCCGAGTACCGCTCAGAGCAGAGCGTCAGGCTGCGCCGGCAGGTCATCCAGGTGGTGCTGAACGGCATGGAGTCCTACCAGGAG
Seq A exon
GTGACG
Seq C2 exon
GTCCAGCGGAACTGCTGCCTGACGCTCTGCAACTTCAGCATCCCGGAGGAGCTGGAGTTCCAGTACCGTCGCGTCAACGAGCTCCTGCTCAGCATCCTCAACCCCACGCGGCAGGACGAGTCGATCCAGCGCATCGCCGTGCACCTGTGCAACGCCCTGGTCTGCCAGGTGGACAACGACCACAAGGAGGCCGTGGGCAAGATGGGCTTTGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010208-16-9,17-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF032249=V-ATPase_H_N=PU(32.2=81.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCCAGGTGGTGCTGAAC
R:
CTCCTCCGGGATGCTGAAGTT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development