BtaALTD0024608-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007488 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr18:36008102-36008547:+
Coord C1 exon
chr18:36008102-36008202
Coord A exon
NA
Coord C2 exon
chr18:36008479-36008547
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGATT
5' ss Score
3.55
3' ss Seq
GCCCTCTTCTCTCTCCCCAGACC
3' ss Score
12.83
Exon sequences
Seq C1 exon
CCGAGCGCTTCAGAATTGCCGAGAACTAGGCCCGCAGTGGAAGGAGCCGGCCGGAGCACCGTATGGGCCCGAGGCCGCGAAGTCCGGAGCCCCAGCAGGCG
Seq A exon
NA
Seq C2 exon
ACCCTGTCCCTGGGAGCCCTGCCCGGCGACCCAGGGATGGCCCCGAGGCCTCCGACGGCCAGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007488-1-0,2-0,3-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTAGGCCCGCAGTGGAA
R:
CAGGGCTCCCAGGGACAG
Band lengths:
100-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development