BtaALTD0024655-4/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36452842-36454061:-
Coord C1 exon
chr12:36453961-36454061
Coord A exon
chr12:36453741-36453960
Coord C2 exon
chr12:36452842-36452910
Length
220 bp
Sequences
Splice sites
5' ss Seq
CAGGCGCGT
5' ss Score
1.98
3' ss Seq
CATTTTTTCTCTTATCCCAGGAC
3' ss Score
8.44
Exon sequences
Seq C1 exon
CGCTAAAGCCGGGACTGGACCGAGCGGAGTTGCGCGTGTTGCCGAAGGGGGGTGGGCCGGGGGCGGGGAGGTTCGTTCCGTGGAGCCGCAGCCAGAACCGG
Seq A exon
GTGAGGCTTGTCCCCGCCGTGTCTCCAGTCCAGGGCCGCCGACAGTGGGGGTGGCCGGGAGCGGCGCAGCCTCCGGAGGCGGAGGCGCCGGGAGGCGGAGATGGGTGAGGGCGGCCTCCGAAGCCTCCCACCGACCCGGGACGAGCGCCCCGCGGCGCGGCCGCCGTCGCCGCTGCCGCTTCGGGGCCTCCGGCTGCCGGCGGCTCCGCTGATGTCCCAG
Seq C2 exon
GACCAGGACTTGAATTCATCCTTACCTAGTGCATCTTTGGCTGAGCGTGAGGAGGACAACACCCCGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-2-0,3-0,4-0,5-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAGCCGGGACTGGAC
R:
AATCGGGGTGTTGTCCTCCTC
Band lengths:
169-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development