BtaALTD0024667-3/5 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36493957-36494905:+
Coord C1 exon
chr12:36493957-36494057
Coord A exon
chr12:36494058-36494191
Coord C2 exon
chr12:36494836-36494905
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGCGCGT
5' ss Score
1.98
3' ss Seq
GTTTTCATTCTTCGTTCTAGGGC
3' ss Score
10.73
Exon sequences
Seq C1 exon
CGCATCCAGAACCGGGTGAGGCTTGTCCCCGCCGTGTCTCCAGTCCAGGGCCGCCGACAGTGGGGGTGGCCGGGAGCGGCGCAGCCTCCGGAGGCGGGGGC
Seq A exon
GCCGGGAGGCGGAGATGGGTGAGGGCGGCCTCCGAAGCCTCCCACCGACCCGGGACGAGCGCCCCGCGGCGCGGCCGCCGTCGCCGCTGCCGCTTCGGGGCCTCCGGCTGCCGGCGGCTCCGCTGATGTCCCAG
Seq C2 exon
GGCCAGGAATCACCTTCAGGACAGTCTGGTGATAGTTCGGTGATAGTAATTAAGGAGGAAAGCGTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167-2-0,3-0,4-0,5-0,6-0-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCAGAACCGGGTGAG
R:
CGTCGACGCTTTCCTCCTTAA
Band lengths:
170-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development