BtaALTD0024697-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000040603 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr18:57904190-57904802:+
Coord C1 exon
chr18:57904190-57904312
Coord A exon
chr18:57904313-57904316
Coord C2 exon
chr18:57904707-57904802
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATATCCTTTCTTATTCACAGGGT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGGTTAGTGTCTTTTGAGGATGTGACCATGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGACACCTGTATCAGGATGTGATGCTGGAGATCTACAGCCACTTTTTCTCT
Seq A exon
GTGG
Seq C2 exon
GGTATCACATTCCCAACCCAGAGATCATTTTCAGGATTGAAGAAGGAAAGGAACCATGGGTGAGGAAGACTGAACTCCCATGTCAGAGGTATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040603-4-3,5-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGTGATGCTGGAGATCT
R:
CCTCACCCATGGTTCCTTTCC
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development