BtaALTD0024702-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000009889 | ZNF181
Description
Bos taurus zinc finger protein 181 (ZNF181), mRNA. [Source:RefSeq mRNA;Acc:NM_001076549]
Coordinates
chr18:45705358-45706440:+
Coord C1 exon
chr18:45705358-45705458
Coord A exon
NA
Coord C2 exon
chr18:45706365-45706440
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GTTTTGATCTGCCTTTTCAGGCA
3' ss Score
9.6
Exon sequences
Seq C1 exon
CAGCAGCAGTATTCAAGGTCCTGGAATCGCGCAGGACTCTGGGCAGCACCGTTCCGGCGAGGCAAGCGGCCTTTGTTCGCTACAGCTACGCGGCGCGTCAG
Seq A exon
NA
Seq C2 exon
GCACTGCCCTTCTATAAGAAGAGAACCTGGAAAGAGGACTGTGTTGACTATTGGAAATTGCAAAGTCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009889-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGCGCAGGACTCTGG
R:
CAACACAGTCCTCTTTCCAGGT
Band lengths:
124-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development