BtaALTD0024704-3/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011498 | ZNF184
Description
Bos taurus zinc finger protein 184 (ZNF184), mRNA. [Source:RefSeq mRNA;Acc:NM_001100372]
Coordinates
chr23:30959940-30960841:+
Coord C1 exon
chr23:30959940-30960040
Coord A exon
chr23:30960041-30960392
Coord C2 exon
chr23:30960704-30960841
Length
352 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCCCATCTTGTGTCTTTTAGGGC
3' ss Score
11.58
Exon sequences
Seq C1 exon
CAGAGCACGGTTTACCGCTAGTAAGTGGGGGTGGGGTTCTCTCCGCACGACCGGAAGTGGCCGTTGAAACCGGCTGTAGGCATGAAAAGAGGTTGGCCGAG
Seq A exon
GTAAAAGTCCAGCTGCTTCGGCTCCCTTCGCTAGGTTTGGTGATTGACCCAGAGCTTCCAGACCCGGGATTGGAGTGTGAGAATCGCTCTAGAGGGAAGCCCAGGTATCACTATGGCAACCGGCAGCCCTCCGGCCGCGTGACGTCACCTCTCTCACTCTAGGCTGGGAGCGGCCTCTGAGGGAGGGAGCTGGGGAGTCCTCGAAGAGGGCGCCCCTCGCCTCTTTCAGTGTGGGGGCTGTTCCGCCCCGATCTCTGGGAGGGCTTTGTTCTTTTGTTCAGGCCTAGGAGGAAGGCCTAGAGCCGGGCCCCGCCCTGTTTGTCCACCTTCCAGCTTTTCTGCTCCGCAACAG
Seq C2 exon
GGCAACCAACTTCAGCGTGTATAAGGGTTCAGACTCCTGCTGGACATCTGGGCTCCAGAAAGAGGACCCAGATACGCTGCTTGGGAAACCCTGGTGTCCAGATTCCAAGAGGAACGAGATGTGCGCCTGAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011498-0-0,1-0,2-0,3-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGTAAGTGGGGGTGGGGTT
R:
CTTCCATCTCAGGCGCACATC
Band lengths:
222-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development