BtaALTD0024707-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007074 | ZNF192
Description
Bos taurus zinc finger protein 389 (ZNF389), mRNA. [Source:RefSeq mRNA;Acc:NM_001145131]
Coordinates
chr23:30285893-30287061:-
Coord C1 exon
chr23:30286727-30287061
Coord A exon
chr23:30286713-30286726
Coord C2 exon
chr23:30285893-30286078
Length
14 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TGCAACTGTCTTGTTTCTAGGTC
3' ss Score
10.3
Exon sequences
Seq C1 exon
AGGAAGATCATGGTTGGGACCAGGAATCAAGTCTACATGAAAATAACCCTCCTGGCCAAGAGCTGTTCCGCCTACGCTTCAGGAAGTTATGCTACCAAGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTCCGCGCACTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTAGAGCAGTTCTTGACTATCCTGCCTGAGGAGCTCCAGACTCTGGTGAAGGAACATCAGCTAGAGAATGGAGAGGAAGTGGTGACCCTACTGGAGGATTTGGAAAGGCAAATTGATATATTGGGACGGCCG
Seq A exon
GTACGTAGAAGGAG
Seq C2 exon
GTCCCAGCTCGTCCACATGGACATAGGGTACTCTGGGAGGAGTTGATGCATTCAGAATCTGCACCGGAGCCTCCAGATACTCAGCTCCAACCTGTGGCAATGCAGCACAAATCTGCAGTTCTCCAAGGGCCACATGATAGAGGTGAGGAGCCAGATTTCACTGCTGAGGAGGGAGGAAGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007074-3-6,4-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.223 A=NA C2=0.858
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGTGACCCTACTGGAGG
R:
CAACTCCTCCCAGAGTACCCT
Band lengths:
101-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development