BtaALTD0024734-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000039523 | ZNF266
Description
Bos taurus zinc finger protein 266 (ZNF266), mRNA. [Source:RefSeq mRNA;Acc:NM_001104968]
Coordinates
chr7:15428839-15437935:+
Coord C1 exon
chr7:15428839-15428939
Coord A exon
chr7:15428940-15428994
Coord C2 exon
chr7:15437847-15437935
Length
55 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
TGCCTTCTTTCTTCTCCTAGGTG
3' ss Score
12.22
Exon sequences
Seq C1 exon
GGAAACGGAAGTGGCGTCACTGTCTGCGTCGGTTTTCCGTCCGGCGGCTTCGTGCTTCTAGGAGGGAGTGGTTTTGGTCGTCCTGTTTCAGCGTGTCCTTG
Seq A exon
GTGAGGCTCGCGTTCAGGAAGGGCTGTGGGATACAAGGAGCGCGTTAAAGGACAG
Seq C2 exon
GTGTTCTTATTAAGGACTCTTTCTGCCTTCCTGAGGAAAAGATAGAAGCAAACAGGATGGTAACTGAGTGTTTGAGAAATTGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039523-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGTCTGCGTCGGTTTT
R:
TCTATCTTTTCCTCAGGAAGGCAGA
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development