BtaALTD0024735-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000040336 | ZNF268
Description
Bos taurus zinc finger protein 268 (ZNF268), mRNA. [Source:RefSeq mRNA;Acc:NM_001083646]
Coordinates
chr17:45191367-45191839:+
Coord C1 exon
chr17:45191367-45191467
Coord A exon
chr17:45191468-45191669
Coord C2 exon
chr17:45191784-45191839
Length
202 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
GTTCTGCCACTCTCTTGCAGGGA
3' ss Score
10.27
Exon sequences
Seq C1 exon
CGGCCGACCTCGGCTGCCCGAGGGCCGTCGCCGAAGCGCTCAGAGCGGGTGACTCAAAGTCGAGAGGGAGAACGAGCAGATCTGGTTGCAAGATCCAGGAG
Seq A exon
GTCGGCTGGGAGCGCGTCTCCCCCGCATTCCCGCGCTACCAGTTCAGGGCTCGGGGGAGCGGTGCGCGCCGATTCCCTCCAAAATCAAGGGGGCGGGACCGTGCAGACTAGTCTGGCCTCCCTTACGCCTGCCCTGGCCCAGTCGCGTGTGTGTAGGTGGGGACGAAGGTGGGGAACGCCGCGGCTGCGTGAGAGGAGAGAG
Seq C2 exon
GGAACTCAAAACTGGCTGTGGGGATGGCCACCAGGGTCCGGACAGCTGCCATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040336-0-1,1-1,2-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development