BtaALTD0024755-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000037988 | ZNF323
Description
Bos taurus zinc finger protein 323 (ZNF323), mRNA. [Source:RefSeq mRNA;Acc:NM_001046237]
Coordinates
chr23:30115244-30121576:+
Coord C1 exon
chr23:30115244-30115344
Coord A exon
NA
Coord C2 exon
chr23:30121103-30121576
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GACATAATTTTTCTCATCAGGTG
3' ss Score
9.2
Exon sequences
Seq C1 exon
CTTGGCGACGGAGCTTGGGATGATGACGTACTTCCGGCCTTTGTAGGTTTTCTGAGTGATGCTGCCTGCGCGGCGGACCTGGAGCTCCCACGATCCCGAAG
Seq A exon
NA
Seq C2 exon
GTGTATCCTCCTAAATAAGATTAAATCAGAGGATCTTAAATCAGTTACACCTCCACCCCAGGCTGGATTGAGCCCTTCTAAATTAATCCCAGGATGGCTTCAGCAGGGGAACAGGATGGACTTAAGATTGTGAAGGTGGAGGAAGACCCTATCTGGGACCAAGAACCCTACCTTCGAGAGAACAACTTTTCTGGCCAGGAAGCCTCCCGCCAACTTTTTAGACACTTTTGTTACCAAGAAACTCCTGGTCCCCGAGAAGCACTGAGCCGGCTTCGGGAACTCTGTCATCAGTGGCTGAGGCCAGACACACATACCAAGGAGCAAATCTTGGAGCTCCTGGTGCTCGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTCCAGGCCTGGGTATGTGAGCACCATCCCGAGAGTGGGGAGGAGGCAGTGGCTGCAGTTGAAGACCTGGAGCGAGAGCTCAGTGAACCAGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037988-1-1,2-1,3-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.205
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=74.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGAGCTTGGGATGATGAC
R:
GCTTCCTGGCCAGAAAAGTTG
Band lengths:
298-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development