BtaALTD0024761-1/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016513 | ZNF331
Description
Bos taurus zinc finger protein 331 (ZNF331), mRNA. [Source:RefSeq mRNA;Acc:NM_001103251]
Coordinates
chr18:61030850-61032948:-
Coord C1 exon
chr18:61032848-61032948
Coord A exon
NA
Coord C2 exon
chr18:61030850-61030921
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CTGTCCTTTCTTTCCTCCAGGCC
3' ss Score
13
Exon sequences
Seq C1 exon
TTTTTTTTTTTTTTCAAGCTCTGGTTTCCTGGCGACGCTGTCCGGAGTTAACCTGCACGCCTGCGCTCCCTCCCTGCCTGTTAGTTGTTGGGCCCAGAGCG
Seq A exon
NA
Seq C2 exon
GCCAGCTATCCTCCAGAAAAAGCATCCTGAAGAAGAAGACAGATTATCACAGATCTTCACATCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016513-0-0,1-0,2-0,3-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCGGAGTTAACCTGCAC
R:
TGGGACTTGATGTGAAGATCTGTG
Band lengths:
135-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development