BtaALTD0024769-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012353 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr14:1496226-1496813:-
Coord C1 exon
chr14:1496739-1496813
Coord A exon
NA
Coord C2 exon
chr14:1496226-1496336
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATCG
5' ss Score
3.36
3' ss Seq
AGGCCCCGTCTCCTTCCCAGGAG
3' ss Score
6.61
Exon sequences
Seq C1 exon
GAGGAGTGGGGCCTTCTGGGCCCTGCTCAGAAGGGCCTCTACAGGGAAGTGATGCTGGAGACTTACAGGAACCTG
Seq A exon
NA
Seq C2 exon
GAGCTGGACTTGCAGGTCCCAAGCCGGAGGTGATTGCACAGTTGGAGCAAGGGGATGAGCTGTGGGTCCTGGACATGCATGGGGCAGAGCAACCAAGCGTTGATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012353-9-13,10-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.518
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(84.8=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTCTACAGGGAAGTGAT
R:
CATCCCCTTGCTCCAACTGTG
Band lengths:
100-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development