BtaALTD0024770-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47791692-47792652:-
Coord C1 exon
chr18:47792550-47792652
Coord A exon
chr18:47792546-47792549
Coord C2 exon
chr18:47791692-47791764
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGA
5' ss Score
2.17
3' ss Seq
ACTCCTTTCTCCCTCCCCAGCTC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GCGGGTAGGGGCAAACAGCCTCTGGGTGCTGTGGGAGCTGCTGGGCTCTTCTATTTGTTTCAAGTACAGTGGAGCGGCGCTGACCAGACAGACCTGAGGAATC
Seq A exon
GTAA
Seq C2 exon
CTCTGCTCTACTTGCACAGTCTTCCAGAATGGAGTAAAGAATGCCTGTTGACCACCCACAAGGCACCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902-9-10,10-10,11-10-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAAGTACAGTGGAGCGGC
R:
GGGTGGTCAACAGGCATTCTT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development