BtaALTD0024792-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010252 | ZNF397
Description
Bos taurus zinc finger protein 397 (ZNF397), mRNA. [Source:RefSeq mRNA;Acc:NM_001075262]
Coordinates
chr24:22098467-22099371:-
Coord C1 exon
chr24:22098877-22099371
Coord A exon
chr24:22098799-22098876
Coord C2 exon
chr24:22098467-22098608
Length
78 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
CCATATTTTACTGATTTCAGGTC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAAAGAAGAGATTACCCAAAGAAACTCTGAAGTACAGGACCCAGTTTTAGTGAGCTTCACGCTAAGCTGTTTCAGCCCAGAATGGCTGTGGAATCCAGAGCAGTTTCAACCCCAGTACCTCAGAATTCTCAGGAACAAGAGCTGATACTGGTGAAAGTAGAAGAAAGCCGTTCTTGGGGTCAGAAACTTAAGCAGAGTGGGAGTGCCCGATCCTGCCAAGAATTGTTTCGCCAGCAGTTCAGAAAGTTCTGCTACCAGGAGACACCGGGGCCCCGGGAAGCGCTGGGCCGACTCCAGGAGCTTTGCTATCAGTGGCTCAGGCCTGAGTTGCACACGAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGAGTATCCTGCCAGAGGAGCTGCAGATCTGGGTTCAGCAGCATAGTCCAAAGAATGGCGAGGAAGCTGTGACTCTGTTGGAGGATCTGGAGAGGGAATTTGATGATCCCGGGCAGCAG
Seq A exon
GTGGGAACAGGGAGATGTGATATGTTATGGGAAAAGGAATGTACAGACTCGAGCATGTGGCATCATCATAAGAATGGG
Seq C2 exon
GTCCCAGCTACTCCACAGGGACCACCAATGCCTTGGAAGGATTTGACCTGTCTTGGAGCAGCCCAGGAGTTTACACATATTCAACGCCAGCCTTTAAAGAAACAGCTGAAACCCTGGGAACCTTGCCTTCCCCCCAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010252-3-2,4-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.542
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=68.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGATCTGGGTTCAGCAG
R:
GTGTAAACTCCTGGGCTGCTC
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development