BtaALTD0024841-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000031686 | ZNF566
Description
Bos taurus zinc finger protein 566 (ZNF566), mRNA. [Source:RefSeq mRNA;Acc:NM_001077017]
Coordinates
chr18:47237126-47247403:+
Coord C1 exon
chr18:47237126-47237226
Coord A exon
NA
Coord C2 exon
chr18:47247331-47247403
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTCTTTCTGTCTTCTCCAGCTC
3' ss Score
11.46
Exon sequences
Seq C1 exon
TGTGGAAGGTTCAGCTTCTTAGGAAGCTTGGGAGACCTGAAGTGGGGAATCAGAGAAGAGGGCGGGGCCGGAGCTTAGGCCTTGTACCGCTCGCTGAAGAG
Seq A exon
NA
Seq C2 exon
CTCTGCTTCTTTCCAAAAAAGGAGCCCAGAGAAGAACTGGTCCTTTTCTGCAAATATCAAAGCCATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031686-0-4,1-4,2-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGGTTCAGCTTCTTAGG
R:
GCCATGGCTTTGATATTTGCAGA
Band lengths:
170-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development