BtaALTD0024846-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000030939 | ZNF575
Description
zinc finger protein 575 [Source:RefSeq peptide;Acc:NP_001035593]
Coordinates
chr18:52073109-52073732:+
Coord C1 exon
chr18:52073109-52073201
Coord A exon
chr18:52073202-52073218
Coord C2 exon
chr18:52073621-52073732
Length
17 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
TCGCCCCCTCTCCCGGCTAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTCTCCCCTCTCCTCTCCACGTCTCCAGCTCCACTCCGTGGTTGAAAGGCAGTGAACGCGGCGTCAATGGACTGAGACTGAGCCAAGAGCCGG
Seq A exon
GTAAAGCTACCTATTGG
Seq C2 exon
GTCCTCCCTCTAGGTTTCTGGGCCAGCAGGATGCTGGAGCGAGAGACGGAGTCTGCGGCCGGGGGCGCCGAGCCTAGTCCCACTGACAAGGAGCCTGTGATCAAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030939-5-4,6-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.947
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTCTCCACGTCTCCAG
R:
GCCCAGAAACCTAGAGGGAGG
Band lengths:
109-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development