BtaALTD0024865-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000018057 | ZNF619
Description
zinc finger protein 619 [Source:HGNC Symbol;Acc:HGNC:26910]
Coordinates
chr22:13368973-13369887:+
Coord C1 exon
chr22:13368973-13369097
Coord A exon
NA
Coord C2 exon
chr22:13369804-13369887
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CATGGCTCTTCTTGTCTTAGTTT
3' ss Score
8.01
Exon sequences
Seq C1 exon
CTTCGGGTCACGTGAGGTCGCGCCGCCGGGACCACCGAAATGCTCTGCCCAGAAGTGCGCTGGGTGCCCGCGCTCGCTTCTGTGTGGGCTGTGAGAGTGCTTCTTGGGGTTCGGAGGGGAAGAGG
Seq A exon
NA
Seq C2 exon
TTTTTAAGGTTCTTGCTTTTCCAAACCGGGAAGAGTGCACAGAGCCAGGGGACATCAGCCATGCTCCAAACCACTTGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018057-13-13,14-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.375
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGGTCACGTGAGGTCG
R:
TGGTTTGGAGCATGGCTGATG
Band lengths:
198-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development