BtaALTD0024881-3/5 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000002956 | ZNF674
Description
Bos taurus zinc finger family member 674 (ZNF674), mRNA. [Source:RefSeq mRNA;Acc:NM_001102010]
Coordinates
chrX:102884770-102885987:-
Coord C1 exon
chrX:102885887-102885987
Coord A exon
chrX:102885831-102885886
Coord C2 exon
chrX:102884770-102884878
Length
56 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGG
5' ss Score
3.6
3' ss Seq
TGTGGTCATTCCCTTTCCAGGGT
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTTGCCATCCCCCCAGCCCCCTCACCTCCCTCCTGCGCGTGCGCAGCACTTGGGCTCCCAGGGCAACGGAGAGCGGAAGTGTTCTGCTCACCCCGAGGGCG
Seq A exon
GTGCGAATTGGCGCTGGCTGTTTTACGCCCTCAGACCTCGGGTTCCTGTTAGTTTA
Seq C2 exon
GGTCAGGGTTCATAACAGCCAACAGCTCACCAGCTTCAGATGCCAGCTGATCTACCATGGGCTTCCTTAGTTAGTCTACAGAAGACCCAGTCTGAGACCTCAAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002956-1-0,2-0,3-0,4-0,5-0-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGAGAGCGGAAGTGTTC
R:
GGTCTCAGACTGGGTCTTCTGT
Band lengths:
137-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development