BtaALTD0024906-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008836 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr8:84934911-84937278:-
Coord C1 exon
chr8:84937178-84937278
Coord A exon
NA
Coord C2 exon
chr8:84934911-84934961
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGC
5' ss Score
6.15
3' ss Seq
TCTTCTTTCTGTCCTCTCAGCTG
3' ss Score
10.16
Exon sequences
Seq C1 exon
GCTTCTTCAGCGCGTGTGCAGCCGTAGCCCCGCCTCCTCACTCGTCTCTGAACTGTAGGGGAGCGGTGTCGTTACGTGGGGTTCTGCTCGGAAAGTGAAGG
Seq A exon
NA
Seq C2 exon
CTGAACCACAATTCTCTACTCTCCCAAAAGCAGAAAATGAACATAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008836-0-2,1-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTCACTCGTCTCTGAA
R:
TCTGCTTTTGGGAGAGTAGAGA
Band lengths:
104-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development