BtaEX0000255 @ bosTau6
Exon Skipping
Description
Bos taurus matrin 3 (MATR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102486]
Coordinates
chr7:52208653-52234359:+
Coord C1 exon
chr7:52208653-52208738
Coord A exon
chr7:52209487-52209567
Coord C2 exon
chr7:52234298-52234359
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTCTTTGAATCCTAGATG
3' ss Score
7.51
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
GATGACTCAAAAGTAGGGCATCCTTGGCCCTCCTGAAGAGATGAAATTAGTGGCAAGTGGACCATCTATCTGTATGGCGTTATCAG
Seq A exon
ATGCCTTTGCCTGAGTGAGAAACCTTCCTCCATTGGGACCCCAGAGGTCTGATGGCCCTTTGTGACATCCAAATAAGTAAT
Seq C2 exon
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006756_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.286
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACTCAAAAGTAGGGCATCCT
R:
AAGAAGAAGCTGGCATCGACG
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development