BtaEX0000269 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MP09]
Coordinates
chr23:27154333-27155429:+
Coord C1 exon
chr23:27154333-27154363
Coord A exon
chr23:27155027-27155142
Coord C2 exon
chr23:27155253-27155429
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCATCCTGTATCTTGCAGGAG
3' ss Score
9.59
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
TATGATGCAGCAGCCGTTATTGAGTCTCCAG
Seq A exon
GAGGAGAGATGGAGGAGGCAGAGCTCACGTCCTGGCGTTTCGTGTCATCTCCCTTCTCCCTGGATCTAAGCAAAACCAAGCAGCAGCTTATACCTGGGGTCCCCTTCCTGCTGCAG
Seq C2 exon
GCCCTGGTCCGTGACATGTCAGGCTCCCCAGCCTCTGGCATTCCCGTCAAAGTGTCTGCCAAGTTGTTTTCTGGATCGACTTCTAAAAACCGGGACTTTGAACAGAACACAGATGGGAGCGGCCAAGTCATCGTCTCCATTGGTGTTCCTCGGACCATCTCAGAAGTGCAGCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006864_MULTIEX1-17/47=16-18
Average complexity
S
Mappability confidence:
78%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCAGCAGCCGTTATTGA
R:
GCTGCACTTCTGAGATGGTCC
Band lengths:
202-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development