BtaEX0000440 @ bosTau6
Exon Skipping
Description
Chymotrypsinogen A Chymotrypsin A chain A Chymotrypsin A chain B Chymotrypsin A chain C [Source:UniProtKB/Swiss-Prot;Acc:P00766]
Coordinates
chr18:2605219-2605919:+
Coord C1 exon
chr18:2605219-2605298
Coord A exon
chr18:2605427-2605719
Coord C2 exon
chr18:2605841-2605919
Length
293 bp
Sequences
Splice sites
3' ss Seq
GGGGTCTCCTTCTCTCCCAGGCG
3' ss Score
8.51
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
Exon sequences
Seq C1 exon
GACAAGACCGGCTTCCACTTCTGCGGGGGCTCCCTCATCAACGAGAACTGGGTGGTCACCGCCGCCCACTGCGGTGTCAC
Seq A exon
GCGAGGGTCTCCCCTGGAGCGGAGGACAGGCTGCCCCTAGCCAAGCTGGACCACCAGTAGGCTTCGAGCCCCAACCCCGAGGTTCTCACCTGCCTGCCCCGAGGCTGCTCTGCATGCTCGGCAGCCTGAGCTGTGGCTTCCACGTCCAGGCGCCCGCCTCCCAGGTTCTAATTTTGAGATGTGCAGCAAATCCAGGTCCTGCTGGTCTCCTGGGGTCGCAGGGAAAACACTCGGCAAGCGAGACTGCACAGTGGAGATTCCGAGCTTCAAGCTCCGACCCACACCACACCCCT
Seq C2 exon
AACCTCTGATGTGGTAGTGGCTGGGGAGTTTGACCAAGGCTCAAGCTCTGAGAAGATCCAGAAGCTGAAGATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011995_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=PD(16.4=64.3)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Inclusion Isoform:
ENSBTAT00000015915fB88
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGACCGGCTTCCACTTC
R:
TTGGCGATCTTCAGCTTCTGG
Band lengths:
158-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development