BtaEX0000854 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1ML09]
Coordinates
chr13:17848294-17852171:+
Coord C1 exon
chr13:17848294-17848431
Coord A exon
chr13:17849597-17849664
Coord C2 exon
chr13:17852138-17852171
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATCACATTTTTAACACATAGCAT
3' ss Score
4.72
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AACCGCCCTCATACTTGCTGTCAATTATGAATGTACCGATGTAGTCGGTCTTCTCCTTCAGCGAGGTGCTGATGTCTTTTCTCCAGATGTCTTTGGACGGACTGCGGAAGAATATGCTGCTATTAGTGGTTTTAATAT
Seq A exon
CATTTGCGAACTGATCTCTGAATATAAAGAAAAGAGGCCTAAAACTACTCCCGAAAACAGCAACCCAG
Seq C2 exon
CAGCTAAGAGTTCTGAAGAAGACTCTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022931_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=1.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(55.4=100)
A:
PF127962=Ank_2=PD(20.5=70.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTCATACTTGCTGTCAA
R:
TGCTTAAAGAGTCTTCTTCAGAACT
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development