BtaEX0000872 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BFN5]
Coordinates
chr16:5572766-5574559:-
Coord C1 exon
chr16:5574493-5574559
Coord A exon
chr16:5573369-5573557
Coord C2 exon
chr16:5572766-5572942
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTACTTTTGTTATTCCAAGGGA
3' ss Score
6.27
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATATCTAACATGTTGTTGCTAATCAATGTCCTTCTCACCTCGTGGTTTTACACTGCTCACGGACAGG
Seq A exon
GGAAACCTTGTAATTATCCAGTAATAAAACATGGACGGCTATATTATTCATACAGAGGATACTTTCCAGCACATGTAAATCAACAGTTTGTCTATAACTGTGATCATTATTTTGTGCCTCCTTCACAACGTTCCTGGGACCACCTGACTTGCACAGCAGAAGGATGGTCTCCAGAAGAACCATGCCTCA
Seq C2 exon
GACAATGTATTTTCAATTATTTGGAAAATGGACATACCCCACATCCTGAAGAAAAATATTTACAGGGTGAAACTGTAAGAGTTCGCTGCTATGAAGGCTACAGTCTTCAAAATGATCAGAACACAATGACCTGCACAGAGAGTGGCTGGTCTCCTCCTCCCAGATGCATCCGTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023177-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(95.2=93.8),PF0008415=Sushi=PU(1.8=1.6)
C2:
PF0008415=Sushi=PD(3.2=3.3),PF0008415=Sushi=PD(96.5=91.7)
Main Inclusion Isoform:
ENSBTAT00000031527fB157
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTGTTGCTAATCAATGTCCT
R:
TGACACGGATGCATCTGGGAG
Band lengths:
237-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development