BtaEX0000923 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr1:121432887-121434650:-
Coord C1 exon
chr1:121434524-121434650
Coord A exon
chr1:121433799-121433879
Coord C2 exon
chr1:121432887-121432969
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATATCTTTCCTCATGAACAGGAT
3' ss Score
9.04
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACTCAGTGACCTTCACTGATGTGGCTGTGTACTTCAACCAGGAAGAGTGGACTTTACTGAATCCCTTTCAAAGAAAGCTATATAGAAATGTGATGCTGGAAAACTACAAGAACCTGACCACAGCAG
Seq A exon
GATATCAAGCAATCAAACCCACTTTAATCTCTTGGTTGGAACAAGACGTATTAAAAACTGTGGAGAGAGGAATCCTCCAAG
Seq C2 exon
AATGGGAAATGCAACTTATATCCAATGACTTGGGAATTCAGCAGGATATTTTGCCAGAAAAAACATCAAATAGGGTACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025146_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTCACTGATGTGGCT
R:
TCCTGCTGAATTCCCAAGTCA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development