BtaEX0000987 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPJ3]
Coordinates
chr5:357009-359929:-
Coord C1 exon
chr5:359799-359929
Coord A exon
chr5:359116-359189
Coord C2 exon
chr5:357009-357120
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTTCTTTGCTGAAGGAC
3' ss Score
6.63
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CCCGGGTACCGCATCCGAGACAAAGACCTCAGAAAGATTCACAAAGCTGCCATTGTGGGCAACGTAGCCAAAGTGCAGCTTGTTCTGTTGTTTGGAAAAAATGGCCTGAACGACAGGGGCAAGATGAACAG
Seq A exon
GACCTTAGAAGACAGCTTTGAAGTAGGAAGTTGGCTGTGTTCTTGAATAGGAAGACATTTTCCTAGGATGTATG
Seq C2 exon
GACTGCCCTCCACTTGGCCTGTGCCAATGGCCATTCAGCGATCACTCTGCTGCTGGAGAGAAAATGCCTGCTTAACCTCTGTGACAATGAAAACAGGACAGCGCTGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027770_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=70.5)
A:
NO
C2:
PF127962=Ank_2=FE(39.8=100)
Main Inclusion Isoform:
ENSBTAT00000014687fB171
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAGTGCAGCTTGTTCT
R:
CTCATCAGCGCTGTCCTGTTT
Band lengths:
177-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development