BtaEX0001072 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MJ74]
Coordinates
chr18:60782413-60791328:+
Coord C1 exon
chr18:60782413-60782496
Coord A exon
chr18:60790543-60790642
Coord C2 exon
chr18:60791245-60791328
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCGCCCATCTTTGGCCGCAGCGT
3' ss Score
7.31
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGGCCACTTCCCAAGACTGATCTTACCTGAGAAGGAAGCCCAGAGGAAAAGGAAAGCAAGGAGTCAGAAATGACTCGTTCTGAG
Seq A exon
CGTAGCGCGCTCACCTTCCTCTGTACCGATTCTTCCGCCCACGCGTGCGCAGTATCCTGCAGACCTGGAATTGCGTTTAAATGAGCGACAGAGTGTCCTG
Seq C2 exon
GGGTCACTTCCCAAGACTGATCTTACGTGAGAAGGAAGCCCAGAGGAAGAGGAAAGCAAGGAGTCAGAAATGACTCATTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033642_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACTTCCCAAGACTGATC
R:
TCATTTCTGACTCCTTGCTTTCCT
Band lengths:
156-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development