BtaEX0001195 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B9E7]
Coordinates
chr8:8610155-8613363:+
Coord C1 exon
chr8:8610155-8610252
Coord A exon
chr8:8611199-8611478
Coord C2 exon
chr8:8613221-8613363
Length
280 bp
Sequences
Splice sites
3' ss Seq
TATTATATTGTAGTTTGTAGTTA
3' ss Score
-0.25
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATGAAGTTCACTGTGGCTACAGACCCAAGTTTTCAAACTCAACCGTGCTACAAGCTCACGAACTGTTGAACGTCCAGGATGGCGAGTTCCCATGGCAA
Seq A exon
TTATTATATTCATTCTTTAGGTTAGAAATGACCTTGGAAAACATCACTGTGGTCATGGGATCCAGAACACTCAAGGACTCCCGCCTGGAGAGAAAGCAAGTGCAGAAGATAATTATTCACAAAGATTATGAACCACCTCACCTGGACAGCGACCTCTCCCTGTTGCTGCTTGCCACACCAGTACAATTCAATAACTTCAAAATGCCCATCTGCCTGCAGAAGAAGGAGAAGATCTGGGGCCGCTGCTGGATGACAGAGTGGGTGATGGCTCCTTCATATG
Seq C2 exon
ACCGAAAGGACAACTTCAACATGTACCTGCAGAAGCTGAGAGTGGTGCAGATTACCTGGAGAGACTGCAGCCAGAGGGTAGACCACCTCTCCAGGAACATGCTTTGCGCCTGGCAAGAACTGGGCACCAAAGGCAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038291-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PU(52.1=98.7)
C2:
PF0008921=Trypsin=FE(32.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGTTCACTGTGGCTACA
R:
CAGTTGCCTTTGGTGCCCAG
Band lengths:
237-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development